MolNFT v1 · #144769 · protein
Wild type structure of sirhp
6C3Y · Sulfite reductase [NADPH] hemoprotein beta-component: “Wild type structure of sirhp”. X-ray diffraction, 4 ligands (SF4, SRM, K), 6 pockets (best druggability 0.76). MolNFT v1 #144769 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6C3Y
- Type
- protein
- Length
- 464 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sulfite reductase [NADPH] hemoprotein beta-component
- EC
- 1.8.1.2
- UniProt
- P17846
- Ligands
- SF4, SRM, K, PO4
- Pockets
- 6 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) | protein | 464 | 36% helix, 22% strand | P17846 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · chains A
- SRM · Siroheme · ligand · chains A
- K · Potassium ion · metal · chains A
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 523 | 0.76 | 0.84 | 58 | PO4, SF4, SRM |
| 2 | 53 | 0.50 | 0.87 | 17 | empty |
| 3 | 111 | 0.44 | 0.78 | 27 | empty |
| 4 | 73 | 0.44 | 0.81 | 20 | empty |
| 5 | 61 | 0.37 | 0.79 | 16 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P17846
- Elsewhere: RCSB PDB 6C3Y · PDBe 6C3Y · UniProt P17846
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