MolNFT v1 · #144712 · protein

Capsid protein in the staphylococcus aureus phage 80ALPHA-derived SAPI1 mature capsid

6C22 · Major head protein: “Capsid protein in the staphylococcus aureus phage 80ALPHA-derived SAPI1 mature capsid”. Electron microscopy, 17 pockets (best druggability 0.82). MolNFT v1 #144712 on GenesisL1: 3D structure, binding sites and…

PDB: 6C22
Type: protein
Length: 1,100 residues
Chains: 4
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Major head protein
UniProt: A4ZFB3
Pockets: 17 · best druggability 0.82

Structure

electron microscopy · 1 distinct chain · 27% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Major head protein	protein	275	27% helix, 5% strand	A4ZFB3

Pockets

17 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1084	0.82	0.83	131	empty
2	738	0.77	0.82	86	empty
3	843	0.77	0.81	104	empty
4	497	0.74	0.83	75	empty
5	536	0.71	0.81	64	empty

Interfaces

2 interfaces between chains.

C–D · 646 Å² buried · 4 hydrogen bonds · protein-protein
B–C · 469 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

6C22 · Capsid protein in the Staphylococcus aureus phage 80alpha-derived SaPI1 mature capsid · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A4ZFB3
Elsewhere: RCSB PDB 6C22 · PDBe 6C22 · UniProt A4ZFB3

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.