MolNFT v1 · #144662 · protein
Lysinoalanine synthase, durn, from duramycin biosynthesis
6C0G: “Lysinoalanine synthase, durn, from duramycin biosynthesis”. X-ray diffraction, 1 ligand (K), 2 pockets (best druggability 0.44). MolNFT v1 #144662 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6C0G
- Type
- protein
- Length
- 228 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysinoalanine synthase
- Ligands
- K
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 64% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Lysinoalanine synthase | protein | 114 | 64% helix, 0% strand | — |
Ligands and binding sites
- K · Potassium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 189 | 0.44 | 0.73 | 23 | empty |
| 2 | 120 | 0.37 | 0.72 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 117 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6C0G · Lysinoalanine synthase, DurN, from duramycin biosynthesis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6C0G · PDBe 6C0G
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