MolNFT v1 · #144644 · protein
Structure of the hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the gl precursor of the broadly neutralizing antibody AP33
6BZW · AP33 gl heavy chain: “Structure of the hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the gl…”. X-ray diffraction, 20 pockets (best druggability 0.70). MolNFT v1 #144644 on GenesisL1: 3D structure…
- PDB
- 6BZW
- Type
- protein
- Length
- 1,780 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AP33 gl heavy chain; AP33 gl light chain; E2 AS412 peptide
- Pockets
- 20 · best druggability 0.70
Structure
x-ray diffraction · 8 distinct chains · 6% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | AP33 gl heavy chain | protein | 218 | 7% helix, 53% strand | — |
| D | AP33 gl light chain | protein | 216 | 6% helix, 54% strand | — |
| A, E, G | AP33 gl heavy chain | protein | 219 | 5% helix, 53% strand | — |
| B | AP33 gl light chain | protein | 217 | 6% helix, 53% strand | — |
| F | AP33 gl light chain | protein | 217 | 6% helix, 53% strand | — |
| H | AP33 gl light chain | protein | 218 | 6% helix, 52% strand | — |
| I, K, L | E2 AS412 peptide | protein | 9 | 0% helix, 44% strand | — |
| J | E2 AS412 peptide | protein | 10 | 0% helix, 60% strand | — |
Pockets
20 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 953 | 0.70 | 0.75 | 73 | empty |
| 2 | 888 | 0.69 | 0.75 | 74 | empty |
| 3 | 773 | 0.69 | 0.76 | 67 | empty |
| 4 | 771 | 0.69 | 0.76 | 70 | empty |
| 5 | 160 | 0.59 | 0.83 | 21 | empty |
Interfaces
21 interfaces between chains.
- A–B · 2106 Ų buried · 17 hydrogen bonds · protein-protein
- G–H · 2080 Ų buried · 20 hydrogen bonds · protein-protein
- C–D · 2067 Ų buried · 18 hydrogen bonds · protein-protein
- E–F · 2029 Ų buried · 18 hydrogen bonds · protein-protein
- C–I · 318 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 disulfide (disulfide).
Compared structures
- 6BZW · Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423… · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6BZW · PDBe 6BZW
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