MolNFT v1 · #144605 · protein
Crystal structure of tyrosine-tRNA ligase from helicobacter pylori G27
6BYQ · Tyrosine--tRNA ligase: “Crystal structure of tyrosine-tRNA ligase from helicobacter pylori G27”. X-ray diffraction, 2 pockets (best druggability 0.65). MolNFT v1 #144605 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6BYQ
- Type
- protein
- Length
- 313 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine--tRNA ligase
- EC
- 6.1.1.1
- UniProt
- B5Z7D7
- Pockets
- 2 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 57% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine--tRNA ligase (EC 6.1.1.1) | protein | 313 | 57% helix, 12% strand | B5Z7D7 |
Ligands and binding sites
- IPA · Isopropyl alcohol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 502 | 0.65 | 0.77 | 49 | empty |
| 2 | 87 | 0.53 | 0.85 | 20 | empty |
Compared structures
- 6BYQ · Crystal structure of Tyrosine-tRNA ligase from Helicobacter pylori G27 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5Z7D7
- Elsewhere: RCSB PDB 6BYQ · PDBe 6BYQ · UniProt B5Z7D7
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