MolNFT v1 · #144592 · protein
Crystal structure of the second start domain of yeast LAM4
6BYD · Membrane-anchored lipid-binding protein LAM4: “Crystal structure of the second start domain of yeast LAM4”. X-ray diffraction, 2 pockets (best druggability 0.69). MolNFT v1 #144592 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6BYD
- Type
- protein
- Length
- 197 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Membrane-anchored lipid-binding protein LAM4
- UniProt
- P38800
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Membrane-anchored lipid-binding protein LAM4 | protein | 197 | 28% helix, 33% strand | P38800 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 335 | 0.69 | 0.82 | 42 | empty |
| 2 | 50 | 0.28 | 0.75 | 12 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 6BYD · Crystal structure of the second StART domain of yeast Lam4 · the same entry in another collection · chain A against A, TM-score 1.00
- P38800 · AlphaFold monomer V2.0 prediction for membrane-anchored lipid-binding protein LAM4… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38800
- Elsewhere: RCSB PDB 6BYD · PDBe 6BYD · UniProt P38800
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