MolNFT v1 · #144542 · protein
Crystal structure of efga from methylobacterium extorquens
6BWS · Glycolate utilization protein: “Crystal structure of efga from methylobacterium extorquens”. X-ray diffraction, 3 pockets (best druggability 0.75). MolNFT v1 #144542 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6BWS
- Type
- protein
- Length
- 548 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycolate utilization protein
- UniProt
- A0A1P8QPB5
- Pockets
- 3 · best druggability 0.75
Structure
x-ray diffraction · 4 distinct chains · 40% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycolate utilization protein | protein | 136 | 40% helix, 19% strand | A0A1P8QPB5 |
| B | Glycolate utilization protein | protein | 137 | 39% helix, 19% strand | A0A1P8QPB5 |
| C | Glycolate utilization protein | protein | 142 | 39% helix, 18% strand | A0A1P8QPB5 |
| D | Glycolate utilization protein | protein | 133 | 41% helix, 19% strand | A0A1P8QPB5 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 959 | 0.75 | 0.78 | 54 | empty |
| 2 | 273 | 0.57 | 0.78 | 33 | empty |
| 3 | 140 | 0.44 | 0.76 | 24 | empty |
Interfaces
5 interfaces between chains.
- A–B · 815 Ų buried · 23 hydrogen bonds · protein-protein
- B–C · 781 Ų buried · 6 hydrogen bonds · protein-protein
- A–D · 688 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 214 Ų buried · 4 hydrogen bonds · protein-protein
- B–D · 192 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6BWS · Crystal structure of Efga from Methylobacterium extorquens · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1P8QPB5
- Elsewhere: RCSB PDB 6BWS · PDBe 6BWS · UniProt A0A1P8QPB5
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