MolNFT v1 · #144413 · protein
Enterococcus faecalis penicillin binding protein 4 (PBP4)
6BSQ · PBP4 protein: “Enterococcus faecalis penicillin binding protein 4 (PBP4)”. X-ray diffraction, 1 ligand (CL), 3 pockets (best druggability 0.70). MolNFT v1 #144413 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6BSQ
- Type
- protein
- Length
- 477 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PBP4 protein
- UniProt
- Q9K3C9
- Ligands
- CL
- Pockets
- 3 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PBP4 protein | protein | 477 | 37% helix, 20% strand | Q9K3C9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 606 | 0.70 | 0.78 | 52 | GOL |
| 2 | 142 | 0.41 | 0.75 | 27 | empty |
| 3 | 74 | 0.34 | 0.75 | 16 | empty |
Compared structures
- 6BSQ · Enterococcus faecalis Penicillin Binding Protein 4 (PBP4) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9K3C9
- Elsewhere: RCSB PDB 6BSQ · PDBe 6BSQ · UniProt Q9K3C9
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