MolNFT v1 · #144322 · protein
Crystal structure of medicago truncatula thermospermine synthase (mttsps)
6BQ2 · Thermospermine synthase acaulis protein: “Crystal structure of medicago truncatula thermospermine synthase (mttsps)”. X-ray diffraction, 1 ligand (MG), 9 pockets (best druggability 0.85). MolNFT v1 #144322 on GenesisL1: 3D…
- PDB
- 6BQ2
- Type
- protein
- Length
- 581 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thermospermine synthase acaulis protein
- UniProt
- G7K2D1
- Ligands
- MG
- Pockets
- 9 · best druggability 0.85
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thermospermine synthase acaulis protein | protein | 289 | 36% helix, 34% strand | G7K2D1 |
| B | Thermospermine synthase acaulis protein | protein | 292 | 36% helix, 33% strand | G7K2D1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 278 | 0.85 | 0.96 | 33 | empty |
| 2 | 653 | 0.79 | 0.84 | 67 | EDO, MG |
| 3 | 620 | 0.75 | 0.81 | 68 | MG |
| 4 | 56 | 0.43 | 0.83 | 16 | empty |
| 5 | 56 | 0.42 | 0.82 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1708 Ų buried · 27 hydrogen bonds · protein-protein
Compared structures
- 6BQ2 · Crystal structure of Medicago truncatula Thermospermine Synthase (MtTSPS) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G7K2D1
- Elsewhere: RCSB PDB 6BQ2 · PDBe 6BQ2 · UniProt G7K2D1
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