MolNFT v1 · #144301 · protein

Ctx-M-151 class a extended-spectrum beta-lactamase crystal structure in complex with avibactam at 1.32 ångström resolution

6BPF: “Ctx-M-151 class a extended-spectrum beta-lactamase crystal structure in complex with avibactam at 1.32…”. X-ray diffraction, 1 ligand (NXL), 1 pocket (best druggability 0.33). MolNFT v1 #144301 on GenesisL1: 3D structure, binding…

PDB: 6BPF
Type: protein
Length: 265 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-lactamase
EC: 3.5.2.6
UniProt: A0A077KT80
Ligands: NXL
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-lactamase (EC 3.5.2.6)	protein	265	44% helix, 18% strand	A0A077KT80

Ligands and binding sites

NXL · (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	86	0.33	0.74	20	NXL

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

6BPF · CTX-M-151 class A extended-spectrum beta-lactamase crystal structure in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A077KT80
Elsewhere: RCSB PDB 6BPF · PDBe 6BPF · UniProt A0A077KT80

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