MolNFT v1 · #144202 · protein

Structure of recombinant dwarf sperm whale myoglobin (oxy)

6BMG: “Structure of recombinant dwarf sperm whale myoglobin (oxy)”. X-ray diffraction, 3 ligands (HEM, CD, OXY). MolNFT v1 #144202 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6BMG
Type: protein
Length: 308 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P02184
Ligands: HEM, CD, OXY

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	154	—	P02184

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
CD · Cadmium ion · metal · 8 copies · chains A, B
OXY · Oxygen molecule · ion · 2 copies · chains A, B
ACT · Acetate ion · additive · 7 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6BMG · Structure of Recombinant Dwarf Sperm Whale Myoglobin (Oxy) · the same entry in another collection · chain A against A, TM-score 1.00
P02184 · AlphaFold monomer V2.0 prediction for myoglobin (P02184) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02184
Elsewhere: RCSB PDB 6BMG · PDBe 6BMG · UniProt P02184

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