MolNFT v1 · #144199 · RNA
RNA hairpin containing gpppg-oligo to mimic intermediate formed by activated monomer and activated downstream helper
6BMD: “RNA hairpin containing gpppg-oligo to mimic intermediate formed by activated monomer and activated downstream…”. X-ray diffraction, 1 ligand (GP3). MolNFT v1 #144199 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6BMD
- Type
- RNA
- Length
- 93 nucleotides
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- GP3
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E | — | rna | 24 | — | — |
| B, D, F | — | rna | 7 | — | — |
Ligands and binding sites
- GP3 · Diguanosine-5'-triphosphate · ligand · 3 copies · chains A, B, D, C, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6BMD · RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6BMD · PDBe 6BMD
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