MolNFT v1 · #144132 · protein
Crystal structure of squid arrestin
6BK9 · Visual arrestin: “Crystal structure of squid arrestin”. X-ray diffraction, 1 ligand (CL), 4 pockets (best druggability 0.52). MolNFT v1 #144132 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6BK9
- Type
- protein
- Length
- 280 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Visual arrestin
- UniProt
- Q963B5
- Ligands
- CL
- Pockets
- 4 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Visual arrestin | protein | 280 | 3% helix, 51% strand | Q963B5 |
Ligands and binding sites
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.52 | 0.86 | 19 | empty |
| 2 | 103 | 0.47 | 0.80 | 26 | empty |
| 3 | 59 | 0.40 | 0.81 | 20 | CL |
| 4 | 68 | 0.28 | 0.72 | 16 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6BK9 · Crystal Structure of Squid Arrestin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q963B5
- Elsewhere: RCSB PDB 6BK9 · PDBe 6BK9 · UniProt Q963B5
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