MolNFT v1 · #144121 · protein + RNA
Vsv nucleocapsid with polyamide bound
6BJY: “Vsv nucleocapsid with polyamide bound”. X-ray diffraction, 2 ligands (DV4, IUM). MolNFT v1 #144121 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6BJY
- Type
- protein + RNA
- Length
- 2,131 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P03521
- Ligands
- DV4, IUM
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| R | — | rna | 45 | — | — |
| A, E | — | protein | 421 | — | P03521 |
| B | — | protein | 415 | — | P03521 |
| C | — | protein | 413 | — | P03521 |
| D | — | protein | 416 | — | P03521 |
Ligands and binding sites
- DV4 · 4-{[4-(acetylamino)-1-methyl-1H-pyrrole-2-carbonyl]amino}-1-methyl-N-{4-[(1-methyl-1H-pyrrol-3-yl)amino]-4-oxobutyl}-1H-imidazole-2-carboxamide · ligand · chains R, A, B
- IUM · Uranyl (VI) ion · metal · 15 copies · chains A, B, E, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6BJY · VSV Nucleocapsid with Polyamide Bound · the same entry in another collection · chain R against R, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03521
- Elsewhere: RCSB PDB 6BJY · PDBe 6BJY · UniProt P03521
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.