MolNFT v1 · #144113 · protein

Eubacterium eligens beta-glucuronidase bound to glucuronic acid

6BJQ · Glycoside hydrolase family 2 candidate B-glucuronidase: “Eubacterium eligens beta-glucuronidase bound to glucuronic acid”. X-ray diffraction, 1 ligand (BDP), 7 pockets (best druggability 0.69). MolNFT v1 #144113 on GenesisL1: 3D…

PDB: 6BJQ
Type: protein
Length: 598 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycoside hydrolase family 2 candidate B-glucuronidase
UniProt: C4Z6Z2
Ligands: BDP
Pockets: 7 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycoside hydrolase family 2 candidate B-glucuronidase	protein	598	18% helix, 29% strand	C4Z6Z2

Ligands and binding sites

BDP · beta-D-glucopyranuronic acid · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.69	0.97	19	empty
2	222	0.65	0.83	32	BDP
3	310	0.61	0.79	45	empty
4	50	0.42	0.84	18	empty
5	74	0.41	0.80	22	empty

Compared structures

6BJQ · Eubacterium eligens beta-glucuronidase bound to glucuronic acid · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C4Z6Z2
Elsewhere: RCSB PDB 6BJQ · PDBe 6BJQ · UniProt C4Z6Z2

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