MolNFT v1 · #14403 · protein
Structure of proteus mirabilis catalase for the native form
1M85: “Structure of proteus mirabilis catalase for the native form”. X-ray diffraction, 2 ligands (HEM, SO4), 5 pockets (best druggability 0.76). MolNFT v1 #14403 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1M85
- Type
- protein
- Length
- 476 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Catalase
- EC
- 1.11.1.6
- UniProt
- P42321
- Ligands
- HEM, SO4
- Pockets
- 5 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Catalase (EC 1.11.1.6) | protein | 476 | 34% helix, 17% strand | P42321 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- SO4 · Sulfate ion · ion · 8 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 354 | 0.76 | 0.86 | 36 | HEM |
| 2 | 281 | 0.62 | 0.80 | 39 | empty |
| 3 | 301 | 0.51 | 0.74 | 35 | GOL |
| 4 | 180 | 0.51 | 0.78 | 26 | empty |
| 5 | 151 | 0.44 | 0.75 | 21 | empty |
Modifications
Observed in the structure: 1 modified (oxidation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42321
- Elsewhere: RCSB PDB 1M85 · PDBe 1M85 · UniProt P42321
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