MolNFT v1 · #143965 · RNA
Crystal structure of a F. nucleatum FMN riboswitch bound to wg-3
6BFB: “Crystal structure of a F. nucleatum FMN riboswitch bound to wg-3”. X-ray diffraction, 2 ligands (DKM, MG). MolNFT v1 #143965 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6BFB
- Type
- RNA
- Length
- 109 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- DKM, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | — | rna | 53 | — | — |
| Y | — | rna | 56 | — | — |
Ligands and binding sites
- DKM · 5-[(3S,4S)-3-(dimethylamino)-4-hydroxypyrrolidin-1-yl]-6-fluoro-4-methyl-8-oxo-3,4-dihydro-8H-1-thia-4,9b-diazacyclopenta[cd]phenalene-9-carboxylic acid · ligand · chains X, Y
- MG · Magnesium ion · metal · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6BFB · Crystal structure of a F. nucleatum FMN riboswitch bound to WG-3 · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6BFB · PDBe 6BFB
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.