MolNFT v1 · #143943 · protein

Crystal structure of manganese superoxide dismutase from xanthomonas citri

6BEJ: “Crystal structure of manganese superoxide dismutase from xanthomonas citri”. X-ray diffraction, 1 ligand (MN), 2 pockets (best druggability 0.54). MolNFT v1 #143943 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6BEJ
Type: protein
Length: 402 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Superoxide dismutase
EC: 1.15.1.1
UniProt: A0A1V9H1W3
Ligands: MN
Pockets: 2 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 56% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
E, A	Superoxide dismutase (EC 1.15.1.1)	protein	201	56% helix, 11% strand	A0A1V9H1W3

Ligands and binding sites

MN · Manganese (II) ion · metal · 2 copies · chains E, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	174	0.54	0.79	23	empty
2	166	0.53	0.79	18	empty

Interfaces

1 interface between chains.

E–A · 922 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

6BEJ · Crystal structure of manganese superoxide dismutase from Xanthomonas citri · the same entry in another collection · chain E against E, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1V9H1W3
Elsewhere: RCSB PDB 6BEJ · PDBe 6BEJ · UniProt A0A1V9H1W3

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