MolNFT v1 · #143923 · protein
4-hydroxy tetrahydrodipicolinate reductase from neisseria gonorrhoeae
6BDX · 4-hydroxy-tetrahydrodipicolinate reductase: “4-hydroxy tetrahydrodipicolinate reductase from neisseria gonorrhoeae”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.55). MolNFT v1 #143923 on GenesisL1: 3D structure…
- PDB
- 6BDX
- Type
- protein
- Length
- 260 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 4-hydroxy-tetrahydrodipicolinate reductase
- EC
- 1.17.1.8
- UniProt
- A0A1D3EVW8
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) | protein | 260 | 35% helix, 25% strand | A0A1D3EVW8 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 334 | 0.55 | 0.74 | 39 | SO4 |
Compared structures
- 6BDX · 4-hydroxy tetrahydrodipicolinate reductase from Neisseria gonorrhoeae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1D3EVW8
- Elsewhere: RCSB PDB 6BDX · PDBe 6BDX · UniProt A0A1D3EVW8
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