MolNFT v1 · #143910 · protein

Crystal structure of dioxygenase TETUR07G02040

6BDJ: “Crystal structure of dioxygenase TETUR07G02040”. X-ray diffraction, 1 ligand (FE), 4 pockets (best druggability 0.38). MolNFT v1 #143910 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6BDJ
Type: protein
Length: 402 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TETUR07G02040
UniProt: T1K8P1
Ligands: FE
Pockets: 4 · best druggability 0.38

Structure

x-ray diffraction · 2 distinct chains · 13% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TETUR07G02040	protein	199	13% helix, 30% strand	T1K8P1
U	TETUR07G02040	protein	203	13% helix, 31% strand	T1K8P1

Ligands and binding sites

FE · Fe (III) ion · metal · 2 copies · chains A, U

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.38	0.80	15	FE
2	84	0.38	0.77	15	empty
3	52	0.37	0.80	17	empty
4	63	0.36	0.78	17	empty

Interfaces

1 interface between chains.

A–U · 373 Å² buried · 7 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

6BDJ · Crystal structure of dioxygenase Tetur07g02040 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt T1K8P1
Elsewhere: RCSB PDB 6BDJ · PDBe 6BDJ · UniProt T1K8P1

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