MolNFT v1 · #143818 · protein
Crystal structure of thermus thermophilus rod shape determining protein roda (Q5SIX3_THET8)
6BAR: “Crystal structure of thermus thermophilus rod shape determining protein roda (Q5SIX3_THET8)”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.70). MolNFT v1 #143818 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6BAR
- Type
- protein
- Length
- 299 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rod shape determining protein roda
- UniProt
- Q5SIX3
- Ligands
- CL
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 67% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rod shape determining protein roda | protein | 299 | 67% helix, 3% strand | Q5SIX3 |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains A
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 558 | 0.70 | 0.79 | 65 | OLC |
| 2 | 167 | 0.52 | 0.78 | 19 | empty |
Compared structures
- 6BAR · Crystal structure of Thermus thermophilus Rod shape determining protein RodA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SIX3
- Elsewhere: RCSB PDB 6BAR · PDBe 6BAR · UniProt Q5SIX3
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