MolNFT v1 · #143784 · protein
Crystal structure of mpns with substrate 2-hydroxyethylphosphonate (2- hep) and FE(II) bound
6B9T: “Crystal structure of mpns with substrate 2-hydroxyethylphosphonate (2- hep) and FE(II) bound”. X-ray diffraction, 2 ligands (2HE, FE). MolNFT v1 #143784 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6B9T
- Type
- protein
- Length
- 3,572 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A9A1T2
- Ligands
- 2HE, FE
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, F | — | protein | 447 | — | A9A1T2 |
| B, G | — | protein | 446 | — | A9A1T2 |
| D | — | protein | 453 | — | A9A1T2 |
| E | — | protein | 444 | — | A9A1T2 |
| H | — | protein | 442 | — | A9A1T2 |
Ligands and binding sites
- 2HE · (2-hydroxyethyl)phosphonic acid · ligand · 8 copies · chains A, B, C, D, E, F, G, H
- FE · Fe (III) ion · metal · 9 copies · chains A, B, C, D, E, F, G, H
- FMT · Formic acid · additive · 6 copies · chains A, B, C, D, E, F, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6B9T · Crystal structure of MPnS with substrate 2-hydroxyethylphosphonate (2-HEP) and Fe(II)… · the same entry in another collection · chain H against H, TM-score 1.00
- A9A1T2 · AlphaFold monomer V2.0 prediction for methylphosphonate synthase (A9A1T2) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9A1T2
- Elsewhere: RCSB PDB 6B9T · PDBe 6B9T · UniProt A9A1T2
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