MolNFT v1 · #143776 · protein
Structure of vaccinia virus D8 protein bound to human Fab VV138
6B9J: “Structure of vaccinia virus D8 protein bound to human Fab VV138”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #143776 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6B9J
- Type
- protein
- Length
- 1,302 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q1M1K6
- Ligands
- NA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X, Y | — | protein | 228 | — | Q1M1K6 |
| H, A | — | protein | 212 | — | — |
| L | — | protein | 209 | — | — |
| B | — | protein | 213 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · 7 copies · chains X, L, Y
- GOL · Glycerol · additive · 2 copies · chains X, Y
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6B9J · Structure of vaccinia virus D8 protein bound to human Fab vv138 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1M1K6
- Elsewhere: RCSB PDB 6B9J · PDBe 6B9J · UniProt Q1M1K6
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