MolNFT v1 · #143714 · protein
Crystal structure of legionella effector sded (LPG2509)
6B7P: “Crystal structure of legionella effector sded (LPG2509)”. X-ray diffraction, 9 pockets (best druggability 0.84). MolNFT v1 #143714 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6B7P
- Type
- protein
- Length
- 610 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sded
- UniProt
- Q6RCQ7
- Pockets
- 9 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 56% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sded | protein | 303 | 56% helix, 5% strand | Q6RCQ7 |
| B | Sded | protein | 307 | 55% helix, 5% strand | Q6RCQ7 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 946 | 0.84 | 0.86 | 116 | empty |
| 2 | 132 | 0.55 | 0.83 | 37 | empty |
| 3 | 149 | 0.42 | 0.74 | 22 | empty |
| 4 | 67 | 0.40 | 0.80 | 13 | empty |
| 5 | 66 | 0.38 | 0.79 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1042 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6B7P · Crystal structure of Legionella effector sdeD (lpg2509) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6RCQ7
- Elsewhere: RCSB PDB 6B7P · PDBe 6B7P · UniProt Q6RCQ7
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