MolNFT v1 · #143687 · protein
Crystal structure of desulfovibrio vulgaris carbon monoxide dehydrogenase, dithionite-reduced (protein batch 2), canonical C- cluster
6B6X: “Crystal structure of desulfovibrio vulgaris carbon monoxide dehydrogenase, dithionite-reduced (protein batch…”. X-ray diffraction, 5 ligands (SF4, XCC, FES). MolNFT v1 #143687 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6B6X
- Type
- protein
- Length
- 1,249 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q72A99
- Ligands
- SF4, XCC, FES, MG, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 624 | — | Q72A99 |
| B | — | protein | 625 | — | Q72A99 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 2 copies · chains A, B
- XCC · FE(4)-NI(1)-S(4) cluster · ligand · 2 copies · chains A, B
- FES · Fe2/s2 (inorganic) cluster · ligand · chains A, B
- MG · Magnesium ion · metal · 4 copies
- CL · Chloride ion · ion · 3 copies · chains A, B
- GOL · Glycerol · additive · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6B6X · Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72A99
- Elsewhere: RCSB PDB 6B6X · PDBe 6B6X · UniProt Q72A99
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