MolNFT v1 · #143626 · protein
Tudor in complex with ligand
6B57 · Tudor and kh domain-containing protein: “Tudor in complex with ligand”. X-ray diffraction, 1 ligand (UNX), 3 pockets (best druggability 0.47). MolNFT v1 #143626 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6B57
- Type
- protein
- Length
- 408 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tudor and kh domain-containing protein
- UniProt
- Q9Y2W6
- Ligands
- UNX
- Pockets
- 3 · best druggability 0.47
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tudor and kh domain-containing protein | protein | 201 | 21% helix, 33% strand | Q9Y2W6 |
| B | Tudor and kh domain-containing protein | protein | 207 | 21% helix, 34% strand | Q9Y2W6 |
Ligands and binding sites
- UNX · Unknown atom or ion · ion · 34 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 206 | 0.47 | 0.74 | 29 | UNX |
| 2 | 59 | 0.36 | 0.79 | 20 | UNX |
| 3 | 68 | 0.29 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1560 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y2W6
- Elsewhere: RCSB PDB 6B57 · PDBe 6B57 · UniProt Q9Y2W6
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