MolNFT v1 · #143561 · protein
Apra methyltransferase 1 - gnat in complex with sah
6B39: “Apra methyltransferase 1 - gnat in complex with sah”. X-ray diffraction, 2 ligands (SAH, SO4), 6 pockets (best druggability 0.72). MolNFT v1 #143561 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6B39
- Type
- protein
- Length
- 624 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Apra methyltransferase 1
- UniProt
- A0A1U7N2Z8
- Ligands
- SAH, SO4
- Pockets
- 6 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Apra methyltransferase 1 | protein | 624 | 49% helix, 15% strand | A0A1U7N2Z8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 551 | 0.72 | 0.80 | 73 | SO4, SAH |
| 2 | 492 | 0.67 | 0.79 | 50 | empty |
| 3 | 222 | 0.51 | 0.76 | 25 | empty |
| 4 | 59 | 0.41 | 0.81 | 14 | empty |
| 5 | 97 | 0.39 | 0.76 | 17 | SO4 |
Compared structures
- 6B39 · AprA Methyltransferase 1 - GNAT in complex with SAH · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1U7N2Z8
- Elsewhere: RCSB PDB 6B39 · PDBe 6B39 · UniProt A0A1U7N2Z8
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