MolNFT v1 · #14356 · protein

Crystal structure of the seca translocation ATPase from bacillus subtilis

1M6N · Preprotein translocase seca: “Crystal structure of the seca translocation ATPase from bacillus subtilis”. X-ray diffraction, 1 ligand (SO4), 12 pockets (best druggability 0.83). MolNFT v1 #14356 on GenesisL1: 3D structure, binding…

PDB: 1M6N
Type: protein
Length: 802 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Preprotein translocase seca
UniProt: P28366
Ligands: SO4
Pockets: 12 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Preprotein translocase seca	protein	802	53% helix, 10% strand	P28366

Ligands and binding sites

SO4 · Sulfate ion · ion · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

12 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1085	0.83	0.84	76	empty
2	105	0.63	0.88	24	empty
3	255	0.61	0.80	32	SO4
4	315	0.58	0.77	34	empty
5	187	0.54	0.79	38	empty

Compared structures

1M6N · Crystal structure of the SecA translocation ATPase from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
P28366 · AlphaFold monomer V2.0 prediction for protein translocase subunit seca (P28366) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P28366
Elsewhere: RCSB PDB 1M6N · PDBe 1M6N · UniProt P28366

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