MolNFT v1 · #143499 · protein
Crystal structure kpc-2 beta-lactamase complexed with wck 4234 by co- crystallization
6B1H: “Crystal structure kpc-2 beta-lactamase complexed with wck 4234 by co- crystallization”. X-ray diffraction, 3 ligands (C8Y, SO4, CL). MolNFT v1 #143499 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6B1H
- Type
- protein
- Length
- 533 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9F663
- Ligands
- C8Y, SO4, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 268 | — | Q9F663 |
| B | — | protein | 265 | — | Q9F663 |
Ligands and binding sites
- C8Y · (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carbonitrile · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
- ACT · Acetate ion · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6B1H · Crystal structure KPC-2 beta-lactamase complexed with WCK 4234 by co-crystallization · the same entry in another collection · chain A against A, TM-score 1.00
- Q9F663 · AlphaFold monomer V2.0 prediction for carbapenem-hydrolyzing beta- lactamase kpc (Q9F663) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9F663
- Elsewhere: RCSB PDB 6B1H · PDBe 6B1H · UniProt Q9F663
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