MolNFT v1 · #14339 · protein

Ycdx protein

1M65 · Hypothetical protein ycdx: “Ycdx protein”. X-ray diffraction, 3 ligands (NA, ZN, SO4). MolNFT v1 #14339 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1M65
Type: protein
Length: 234 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein ycdx
UniProt: P75914
Ligands: NA, ZN, SO4

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein ycdx	protein	234	39% helix, 18% strand	P75914

Ligands and binding sites

NA · Sodium ion · metal · 3 copies · chains A
ZN · Zinc ion · metal · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

1M65 · Ycdx protein · the same entry in another collection · chain A against A, TM-score 1.00
P75914 · AlphaFold monomer V2.0 prediction for probable phosphatase ycdx (P75914) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P75914
Elsewhere: RCSB PDB 1M65 · PDBe 1M65 · UniProt P75914

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