MolNFT v1 · #143348 · protein

Structure of pr-10 allergen ara H 8.01.

6AWX · Ara H 8 allergen: “Structure of pr-10 allergen ara H 8.01.”. X-ray diffraction, 1 ligand (NA), 4 pockets (best druggability 0.76). MolNFT v1 #143348 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6AWX
Type: protein
Length: 312 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ara H 8 allergen
UniProt: Q6VT83
Ligands: NA
Pockets: 4 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Ara H 8 allergen	protein	156	28% helix, 46% strand	Q6VT83

Ligands and binding sites

NA · Sodium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	309	0.76	0.87	51	empty
2	289	0.73	0.86	51	empty
3	83	0.36	0.76	19	empty
4	58	0.27	0.73	13	empty

Interfaces

1 interface between chains.

A–B · 648 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

6AWX · Structure of PR-10 Allergen Ara h 8.01. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6VT83
Elsewhere: RCSB PDB 6AWX · PDBe 6AWX · UniProt Q6VT83

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