MolNFT v1 · #143316 · protein
Crystal structure of zea mays acyl-protein thioesterase 2
6AVY: “Crystal structure of zea mays acyl-protein thioesterase 2”. X-ray diffraction, 5 pockets (best druggability 0.66). MolNFT v1 #143316 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6AVY
- Type
- protein
- Length
- 463 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acyl-protein thioesterase 2
- UniProt
- B6T1C9
- Pockets
- 5 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Acyl-protein thioesterase 2 | protein | 231 | 35% helix, 21% strand | B6T1C9 |
| B | Acyl-protein thioesterase 2 | protein | 232 | 37% helix, 21% strand | B6T1C9 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 279 | 0.66 | 0.82 | 31 | empty |
| 2 | 414 | 0.60 | 0.76 | 63 | empty |
| 3 | 73 | 0.52 | 0.85 | 20 | empty |
| 4 | 112 | 0.49 | 0.80 | 17 | empty |
| 5 | 61 | 0.37 | 0.78 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 694 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 6AVY · Crystal structure of Zea mays acyl-protein thioesterase 2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6T1C9
- Elsewhere: RCSB PDB 6AVY · PDBe 6AVY · UniProt B6T1C9
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