MolNFT v1 · #143307 · protein
Staphylococcus aureus type II pantothenate kinase in complex with ADP and pantothenate analog phosphate-meo-N5PAN
6AVP: “Staphylococcus aureus type II pantothenate kinase in complex with ADP and pantothenate analog…”. X-ray diffraction, 3 ligands (ADP, N7E, MG). MolNFT v1 #143307 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6AVP
- Type
- protein
- Length
- 1,048 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A167Z3Z6
- Ligands
- ADP, N7E, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 265 | — | A0A167Z3Z6 |
| C, D | — | protein | 259 | — | A0A167Z3Z6 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 4 copies · chains A, B, C, D
- N7E · N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy) butanoyl]-N-(5-methoxypentyl)-beta-alaninamide · ligand · 4 copies · chains A, C, B, D
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6AVP · Staphylococcus aureus Type II pantothenate kinase in complex with ADP and pantothenate… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A167Z3Z6
- Elsewhere: RCSB PDB 6AVP · PDBe 6AVP · UniProt A0A167Z3Z6
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