MolNFT v1 · #143218 · protein
Crystal structure of the KFJ5 TCR
6AT6 · T-cell receptor beta variable 28, human nkt TCR beta chain…: “Crystal structure of the KFJ5 TCR”. X-ray diffraction, 5 pockets (best druggability 0.70). MolNFT v1 #143218 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6AT6
- Type
- protein
- Length
- 430 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- T-cell receptor beta variable 28, human nkt TCR beta chain chimera; T-cell receptor alpha…
- UniProt
- A0A5B6, K7N5M4, A0A0B4J268, K7N5N2
- Pockets
- 5 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 7% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | T-cell receptor beta variable 28, human nkt TCR beta chain chimera | protein | 240 | 7% helix, 50% strand | A0A5B6, K7N5M4 |
| A | T-cell receptor alpha variable 4, T-cell receptor, SP3.4 alpha chain chimera | protein | 190 | 7% helix, 44% strand | A0A0B4J268, K7N5N2 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 933 | 0.70 | 0.75 | 86 | empty |
| 2 | 59 | 0.40 | 0.81 | 21 | empty |
| 3 | 78 | 0.40 | 0.79 | 23 | empty |
| 4 | 55 | 0.30 | 0.76 | 17 | empty |
| 5 | 50 | 0.29 | 0.75 | 14 | empty |
Interfaces
1 interface between chains.
- B–A · 2142 Ų buried · 30 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A5B6
- Every structure of UniProt K7N5M4
- Every structure of UniProt A0A0B4J268
- Every structure of UniProt K7N5N2
- Elsewhere: RCSB PDB 6AT6 · PDBe 6AT6 · UniProt A0A5B6 · UniProt K7N5M4 · UniProt A0A0B4J268 · UniProt K7N5N2
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