MolNFT v1 · #143160 · protein

Monoclinic eutl - structure determined from merged "group 2" data

6ARD · Ethanolamine utilization protein: “Monoclinic eutl - structure determined from merged "group 2" data”. X-ray diffraction, 1 ligand (NA), 6 pockets (best druggability 0.50). MolNFT v1 #143160 on GenesisL1: 3D structure, binding sites…

PDB: 6ARD
Type: protein
Length: 653 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ethanolamine utilization protein
UniProt: A0A174CSE0
Ligands: NA
Pockets: 6 · best druggability 0.50

Structure

x-ray diffraction · 2 distinct chains · 36% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ethanolamine utilization protein	protein	217	35% helix, 28% strand	A0A174CSE0
B, C	Ethanolamine utilization protein	protein	218	36% helix, 28% strand	A0A174CSE0

Ligands and binding sites

NA · Sodium ion · metal · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	143	0.50	0.79	25	empty
2	116	0.49	0.80	24	empty
3	118	0.47	0.79	22	empty
4	143	0.47	0.77	29	empty
5	131	0.45	0.77	23	empty

Interfaces

3 interfaces between chains.

B–C · 1565 Å² buried · 15 hydrogen bonds · protein-protein
A–B · 1564 Å² buried · 18 hydrogen bonds · protein-protein
A–C · 1557 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

6ARD · Monoclinic EutL - structure determined from merged Group 2" data" · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A174CSE0
Elsewhere: RCSB PDB 6ARD · PDBe 6ARD · UniProt A0A174CSE0

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