MolNFT v1 · #143088 · protein
F9 pilus adhesin fmlh lectin domain from E. COLI UTI89 co-crystallized with O-nitrophenyl beta-galactoside (onpg)
6AOY · Fml fimbrial adhesin fmld: “F9 pilus adhesin fmlh lectin domain from E. COLI UTI89 co-crystallized with O-nitrophenyl beta-galactoside…”. X-ray diffraction, 2 ligands (145, SO4), 1 pocket (best druggability 0.59). MolNFT v1 #143088…
- PDB
- 6AOY
- Type
- protein
- Length
- 310 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fml fimbrial adhesin fmld
- UniProt
- Q1RBS0
- Ligands
- 145, SO4
- Pockets
- 1 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 3% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fml fimbrial adhesin fmld | protein | 153 | 0% helix, 49% strand | Q1RBS0 |
| B | Fml fimbrial adhesin fmld | protein | 157 | 5% helix, 47% strand | Q1RBS0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 399 | 0.59 | 0.76 | 60 | empty |
Interfaces
1 interface between chains.
- A–B · 535 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6AOY · F9 pilus adhesin FmlH lectin domain from E. coli UTI89 co-crystallized with o-nitrophenyl… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1RBS0
- Elsewhere: RCSB PDB 6AOY · PDBe 6AOY · UniProt Q1RBS0
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