MolNFT v1 · #14304 · protein
Crystal structure of isomaltulose synthase (pali) from klebsiella sp. LX3
1M53: “Crystal structure of isomaltulose synthase (pali) from klebsiella sp. LX3”. X-ray diffraction, 7 pockets (best druggability 0.76). MolNFT v1 #14304 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1M53
- Type
- protein
- Length
- 556 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Isomaltulose synthase
- EC
- 5.4.99.11
- UniProt
- Q8KR84
- Pockets
- 7 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Isomaltulose synthase (EC 5.4.99.11) | protein | 556 | 35% helix, 18% strand | Q8KR84 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.76 | 0.96 | 25 | empty |
| 2 | 367 | 0.63 | 0.78 | 38 | empty |
| 3 | 117 | 0.41 | 0.76 | 24 | empty |
| 4 | 100 | 0.37 | 0.75 | 21 | empty |
| 5 | 51 | 0.30 | 0.77 | 13 | empty |
Compared structures
- 1M53 · Crystal structure of isomaltulose synthase (pali) from klebsiella sp. LX3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8KR84
- Elsewhere: RCSB PDB 1M53 · PDBe 1M53 · UniProt Q8KR84
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