MolNFT v1 · #143038 · protein
Crystal structure of PPK2 class III in the complex with AMP from cytophaga hutchinsonii atcc 33406
6ANG · POLYPHOSPHATE:AMP phosphotransferase: “Crystal structure of PPK2 class III in the complex with AMP from cytophaga hutchinsonii atcc 33406”. X-ray diffraction, 2 ligands (AMP, CL), 4 pockets (best druggability 0.63). MolNFT v1…
- PDB
- 6ANG
- Type
- protein
- Length
- 297 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- POLYPHOSPHATE:AMP phosphotransferase
- EC
- 2.7.4.-
- UniProt
- Q11YW6
- Ligands
- AMP, CL
- Pockets
- 4 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | POLYPHOSPHATE:AMP phosphotransferase (EC 2.7.4.-) | protein | 297 | 54% helix, 11% strand | Q11YW6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 208 | 0.63 | 0.83 | 33 | AMP |
| 2 | 71 | 0.48 | 0.83 | 16 | CL |
| 3 | 105 | 0.36 | 0.74 | 22 | empty |
| 4 | 52 | 0.28 | 0.75 | 16 | empty |
Compared structures
- 6ANG · Crystal structure of PPK2 Class III in the complex with AMP from Cytophaga hutchinsonii… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q11YW6
- Elsewhere: RCSB PDB 6ANG · PDBe 6ANG · UniProt Q11YW6
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