MolNFT v1 · #143000 · protein + DNA
Structure of S. COELICOLOR/S. venezuelae bldc-smea-ssfa complex to 3.09 ångström
6AMA · Putative DNA-binding protein: “Structure of S. COELICOLOR/S. venezuelae bldc-smea-ssfa complex to 3.09 ångström”. X-ray diffraction, 20 pockets (best druggability 0.43). MolNFT v1 #143000 on GenesisL1: 3D structure, binding sites…
- PDB
- 6AMA
- Type
- protein + DNA
- Length
- 800 residues
- Chains
- 13
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative DNA-binding protein; DNA (99-mer)
- UniProt
- A0A0M7QSG5
- Pockets
- 20 · best druggability 0.43
Structure
x-ray diffraction · 7 distinct chains · 45% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, G, K, L, C, D | Putative DNA-binding protein | protein | 54 | 50% helix, 9% strand | A0A0M7QSG5 |
| B | Putative DNA-binding protein | protein | 55 | 49% helix, 9% strand | A0A0M7QSG5 |
| H, O | Putative DNA-binding protein | protein | 55 | 47% helix, 9% strand | A0A0M7QSG5 |
| Y | Putative DNA-binding protein | protein | 57 | 40% helix, 16% strand | A0A0M7QSG5 |
| P | Putative DNA-binding protein | protein | 56 | 41% helix, 16% strand | A0A0M7QSG5 |
| N | DNA (99-mer) | dna | 99 | — | — |
| R | DNA (99-mer) | dna | 99 | — | — |
Pockets
20 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.43 | 0.79 | 16 | empty |
| 2 | 78 | 0.42 | 0.80 | 12 | empty |
| 3 | 88 | 0.42 | 0.80 | 15 | empty |
| 4 | 115 | 0.42 | 0.77 | 20 | empty |
| 5 | 134 | 0.42 | 0.76 | 20 | empty |
Interfaces
33 interfaces between chains.
- N–R · 4507 Ų buried · 419 hydrogen bonds · nucleic-nucleic
- O–P · 486 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 477 Ų buried · 8 hydrogen bonds · protein-protein
- H–Y · 467 Ų buried · 3 hydrogen bonds · protein-protein
- L–N · 454 Ų buried · 11 hydrogen bonds · protein-nucleic
Compared structures
- 6AMA · Structure of S. coelicolor/S. venezuelae BldC-smeA-ssfA complex to 3.09 Angstrom · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0M7QSG5
- Elsewhere: RCSB PDB 6AMA · PDBe 6AMA · UniProt A0A0M7QSG5
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