MolNFT v1 · #14297 · protein
Crystal structure of SET3, a superantigen-like protein from staphylococcus aureus
1M4V · SET3, superantigen-like protein: “Crystal structure of SET3, a superantigen-like protein from staphylococcus aureus”. X-ray diffraction, 3 pockets (best druggability 0.40). MolNFT v1 #14297 on GenesisL1: 3D structure, binding sites…
- PDB
- 1M4V
- Type
- protein
- Length
- 393 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SET3, superantigen-like protein
- UniProt
- Q9ZFS6
- Pockets
- 3 · best druggability 0.40
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SET3, superantigen-like protein | protein | 196 | 18% helix, 45% strand | Q9ZFS6 |
| B | SET3, superantigen-like protein | protein | 197 | 19% helix, 45% strand | Q9ZFS6 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.40 | 0.80 | 16 | empty |
| 2 | 58 | 0.35 | 0.78 | 12 | empty |
| 3 | 67 | 0.35 | 0.77 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 285 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 1M4V · Crystal structure of SET3, a superantigen-like protein from Staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ZFS6
- Elsewhere: RCSB PDB 1M4V · PDBe 1M4V · UniProt Q9ZFS6
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