MolNFT v1 · #142953 · protein

Crystal structure of LYSB4, the endolysin from bacillus cereus- targeting bacteriophage B4

6AKV: “Crystal structure of LYSB4, the endolysin from bacillus cereus- targeting bacteriophage B4”. X-ray diffraction, 3 ligands (ZN, SO4, CL), 1 pocket (best druggability 0.42). MolNFT v1 #142953 on GenesisL1: 3D structure, binding sites…

PDB: 6AKV
Type: protein
Length: 151 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LYSB4
UniProt: H9NAL3
Ligands: ZN, SO4, CL
Pockets: 1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	LYSB4	protein	151	33% helix, 14% strand	H9NAL3

Ligands and binding sites

ZN · Zinc ion · metal · chains A
SO4 · Sulfate ion · ion · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	161	0.42	0.74	23	SO4

Compared structures

6AKV · Crystal structure of LysB4, the endolysin from Bacillus cereus-targeting bacteriophage B4 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt H9NAL3
Elsewhere: RCSB PDB 6AKV · PDBe 6AKV · UniProt H9NAL3

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