MolNFT v1 · #142926 · protein

Crystal structure of dmoa from hyphomicrobium sulfonivorans

6AK1 · Dimethyl-sulfide monooxygenase: “Crystal structure of dmoa from hyphomicrobium sulfonivorans”. X-ray diffraction, 6 pockets (best druggability 0.76). MolNFT v1 #142926 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6AK1
Type: protein
Length: 932 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dimethyl-sulfide monooxygenase
EC: 1.14.13.131
UniProt: E9JFX9
Pockets: 6 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Dimethyl-sulfide monooxygenase (EC 1.14.13.131)	protein	466	42% helix, 15% strand	E9JFX9

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	892	0.76	0.79	84	empty
2	875	0.76	0.79	82	empty
3	128	0.45	0.77	20	empty
4	136	0.42	0.75	21	empty
5	61	0.36	0.78	13	empty

Compared structures

6AK1 · Crystal structure of DmoA from Hyphomicrobium sulfonivorans · the same entry in another collection · chain A against A, TM-score 1.00
E9JFX9 · AlphaFold monomer V2.0 prediction for dimethyl-sulfide monooxygenase (E9JFX9) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E9JFX9
Elsewhere: RCSB PDB 6AK1 · PDBe 6AK1 · UniProt E9JFX9

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