MolNFT v1 · #142891 · protein
The structure of enterovirus D68 mature virion
6AJ0 · Viral protein 1: “The structure of enterovirus D68 mature virion”. Electron microscopy, 17 pockets (best druggability 0.80). MolNFT v1 #142891 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6AJ0
- Type
- protein
- Length
- 789 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Viral protein 1; Virion protein 2; Capsid protein VP3; Capsid protein VP4
- UniProt
- A0A097F8Q2, A0A0A7X639, E7FM39
- Pockets
- 17 · best druggability 0.80
Structure
electron microscopy · 4 distinct chains · 7% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Viral protein 1 | protein | 273 | 8% helix, 30% strand | A0A097F8Q2 |
| B | Virion protein 2 | protein | 235 | 8% helix, 34% strand | A0A0A7X639 |
| C | Capsid protein VP3 | protein | 247 | 4% helix, 29% strand | — |
| D | Capsid protein VP4 | protein | 34 | 9% helix, 9% strand | E7FM39 |
Pockets
17 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 572 | 0.80 | 0.86 | 71 | empty |
| 2 | 69 | 0.71 | 0.96 | 25 | empty |
| 3 | 302 | 0.58 | 0.77 | 36 | empty |
| 4 | 280 | 0.56 | 0.77 | 40 | empty |
| 5 | 153 | 0.53 | 0.80 | 26 | empty |
Interfaces
6 interfaces between chains.
- A–C · 4182 Ų buried · 39 hydrogen bonds · protein-protein
- A–B · 2113 Ų buried · 24 hydrogen bonds · protein-protein
- B–C · 1810 Ų buried · 17 hydrogen bonds · protein-protein
- A–D · 885 Ų buried · 13 hydrogen bonds · protein-protein
- C–D · 752 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 6AJ0 · The structure of Enterovirus D68 mature virion · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A097F8Q2
- Every structure of UniProt A0A0A7X639
- Every structure of UniProt E7FM39
- Elsewhere: RCSB PDB 6AJ0 · PDBe 6AJ0 · UniProt A0A097F8Q2 · UniProt A0A0A7X639 · UniProt E7FM39
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