MolNFT v1 · #142784 · protein
Dj-1 with compound 9
6AFG · PROTEIN/NUCLEIC acid deglycase dj-1: “Dj-1 with compound 9”. X-ray diffraction, 1 ligand (72V). MolNFT v1 #142784 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6AFG
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PROTEIN/NUCLEIC acid deglycase dj-1
- EC
- 3.1.2.-, 3.5.1.-, 3.5.1.124
- UniProt
- Q99497
- Ligands
- 72V
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PROTEIN/NUCLEIC acid deglycase dj-1 (EC 3.1.2.-, 3.5.1.-, 3.5.1.124) | protein | 187 | 42% helix, 21% strand | Q99497 |
Ligands and binding sites
- 72V · 1-methylindole-2,3-dione · ligand · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 6AFG · DJ-1 with compound 9 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99497
- Elsewhere: RCSB PDB 6AFG · PDBe 6AFG · UniProt Q99497
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.