MolNFT v1 · #142766 · protein

Crystal structure of the ssdna-binding domain of dnat from salmonella enterica serovar typhimurium LT2

6AEQ · Primosomal protein 1: “Crystal structure of the ssdna-binding domain of dnat from salmonella enterica serovar typhimurium LT2”. X-ray diffraction, 2 pockets (best druggability 0.55). MolNFT v1 #142766 on GenesisL1: 3D structure…

PDB: 6AEQ
Type: protein
Length: 151 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Primosomal protein 1
UniProt: P67524
Pockets: 2 · best druggability 0.55

Structure

x-ray diffraction · 2 distinct chains · 48% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Primosomal protein 1	protein	72	49% helix, 6% strand	P67524
B	Primosomal protein 1	protein	79	48% helix, 5% strand	P67524

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	107	0.55	0.84	28	empty
2	63	0.39	0.80	18	empty

Interfaces

1 interface between chains.

A–B · 695 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

6AEQ · Crystal structure of the ssDNA-binding domain of DnaT from Salmonella enterica Serovar… · the same entry in another collection · chain A against A, TM-score 1.00
P67524 · AlphaFold monomer V2.0 prediction for primosomal protein 1 (P67524) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P67524
Elsewhere: RCSB PDB 6AEQ · PDBe 6AEQ · UniProt P67524

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