MolNFT v1 · #142747 · protein

Crystals structure of classical swine fever virus NS5B (residues 1- 672, Y471A mutant, form 2)

6AE6 · Rdrp catalytic: “Crystals structure of classical swine fever virus NS5B (residues 1- 672, Y471A mutant, form 2)”. X-ray diffraction, 15 pockets (best druggability 0.81). MolNFT v1 #142747 on GenesisL1: 3D structure, binding sites…

PDB: 6AE6
Type: protein
Length: 1,294 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rdrp catalytic
UniProt: Q5U8X5
Pockets: 15 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Rdrp catalytic	protein	647	46% helix, 16% strand	Q5U8X5

Ligands and binding sites

ACT · Acetate ion · additive · 7 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

15 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	820	0.81	0.84	81	empty
2	802	0.81	0.84	77	empty
3	593	0.68	0.78	51	empty
4	561	0.68	0.78	51	empty
5	655	0.66	0.75	53	ACT

Interfaces

1 interface between chains.

A–B · 685 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

6AE6 · Crystals structure of Classical swine fever virus NS5B (residues 1-672, Y471A mutant… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5U8X5
Elsewhere: RCSB PDB 6AE6 · PDBe 6AE6 · UniProt Q5U8X5

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