MolNFT v1 · #142741 · protein
Ldcorocc double mutant- I486A-L493A
6ADZ · Coronin-like protein: “Ldcorocc double mutant- I486A-L493A”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.37). MolNFT v1 #142741 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ADZ
- Type
- protein
- Length
- 193 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Coronin-like protein
- UniProt
- Q3T1U8
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 4 distinct chains · 93% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Coronin-like protein | protein | 48 | 92% helix, 0% strand | Q3T1U8 |
| C | Coronin-like protein | protein | 48 | 94% helix, 0% strand | Q3T1U8 |
| B | Coronin-like protein | protein | 51 | 94% helix, 0% strand | Q3T1U8 |
| D | Coronin-like protein | protein | 46 | 91% helix, 0% strand | Q3T1U8 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, D, C, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.37 | 0.75 | 18 | empty |
Interfaces
6 interfaces between chains.
- A–B · 1024 Ų buried · 4 hydrogen bonds · protein-protein
- A–D · 897 Ų buried · 9 hydrogen bonds · protein-protein
- C–D · 850 Ų buried · 0 hydrogen bonds · protein-protein
- C–B · 675 Ų buried · 11 hydrogen bonds · protein-protein
- B–D · 227 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6ADZ · LdCoroCC Double mutant- I486A-L493A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3T1U8
- Elsewhere: RCSB PDB 6ADZ · PDBe 6ADZ · UniProt Q3T1U8
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