MolNFT v1 · #142667 · protein

Crystal structure of transcription factor from listeria monocytogenes

6ABQ · Padr family transcriptional regulator: “Crystal structure of transcription factor from listeria monocytogenes”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.43). MolNFT v1 #142667 on GenesisL1: 3D structure…

PDB: 6ABQ
Type: protein
Length: 217 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Padr family transcriptional regulator
UniProt: L8DXR9
Ligands: CL
Pockets: 2 · best druggability 0.43

Structure

x-ray diffraction · 2 distinct chains · 58% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Padr family transcriptional regulator	protein	106	59% helix, 14% strand	L8DXR9
A	Padr family transcriptional regulator	protein	111	56% helix, 14% strand	L8DXR9

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.43	0.79	22	empty
2	59	0.36	0.78	16	empty

Interfaces

1 interface between chains.

B–A · 1638 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

6ABQ · Crystal structure of transcription factor from Listeria monocytogenes · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt L8DXR9
Elsewhere: RCSB PDB 6ABQ · PDBe 6ABQ · UniProt L8DXR9

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