MolNFT v1 · #14261 · protein
Crystal structure of yckf from bacillus subtilis
1M3S · Hypothetical protein yckf: “Crystal structure of yckf from bacillus subtilis”. X-ray diffraction, 3 pockets (best druggability 0.67). MolNFT v1 #14261 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1M3S
- Type
- protein
- Length
- 364 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein yckf
- UniProt
- P42404
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein yckf | protein | 181 | 46% helix, 12% strand | P42404 |
| B | Hypothetical protein yckf | protein | 183 | 49% helix, 12% strand | P42404 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 706 | 0.67 | 0.75 | 56 | empty |
| 2 | 62 | 0.31 | 0.75 | 18 | empty |
| 3 | 52 | 0.25 | 0.73 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 190 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42404
- Elsewhere: RCSB PDB 1M3S · PDBe 1M3S · UniProt P42404
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