MolNFT v1 · #142423 · protein

Zinc finger domain from the HRD1 protein

6A3Z · E3 ubiquitin-protein ligase synoviolin: “Zinc finger domain from the HRD1 protein”. Solution nmr, 1 ligand (ZN). MolNFT v1 #142423 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6A3Z
Type: protein
Length: 56 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: E3 ubiquitin-protein ligase synoviolin
EC: 2.3.2.27
UniProt: Q86TM6
Ligands: ZN

Structure

solution nmr · 1 distinct chain · 21% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	E3 ubiquitin-protein ligase synoviolin (EC 2.3.2.27)	protein	56	21% helix, 11% strand	Q86TM6

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6A3Z · Zinc finger domain from the HRD1 Protein · the same entry in another collection · chain A against A, TM-score 1.00
Q86TM6 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase synoviolin (Q86TM6) · a predicted model of the same protein · chain A against A, TM-score 0.84

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q86TM6
Elsewhere: RCSB PDB 6A3Z · PDBe 6A3Z · UniProt Q86TM6

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